Blat OpenMP Patch
1. General
This patch applies OpenMP thread parallelization to blat. This patch does not permit you to use blat. Before using this patch, you must get appropriate license of blat. Check the developer’s web site:
http://www.kentinformatics.com/products.html
2. How to use
First, you must prepare blat original source code. This patch is based on blatSrc35.zip archive. Then, unzip the archive and apply this patch.
> unzip blatSrc35.zip
> cd blatSrc
> patch -p1 < ../blatOpenMP.patch
Then, follow the original instruction. If you have question, please contact sito[at]hgc.jp .
3. License
This patch is freely available under The MIT License (MIT). We are pleased if you use our original DL site to distribute this patch.
The MIT License (MIT)
Copyright (c) 2014 Satoshi ITO, Satoru MIYANO
Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the “Software”), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:
The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.
THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
